Data Preparation

Introduction

data_preparation is a sub-project of the BioForest project aimed at data preparation within the project, itself divided in the following steps:

Usage

data_preparation is only linking for the subtasks for now. See:

• inventories: https://github.com/Bioforest-project/inventories
• species: https://github.com/Bioforest-project/species
• environment: https://github.com/Bioforest-project/environment

Project

data_preparation includes:

• Presentation of the analyses with associated documentation and figures:
  • Reproductive analyses in files.qmd
  • Resulting pages in docs/
  • Document structure definition in _quarto.yml
• Figures in figures/
• R environment definition with renv in renv/ and renv/lock
• R files (.Rbuildignore , .Rdata , .Rprofile , .Rhistory)
• Git and GitHub files (.gitignore , .github/)
• Project documentation (README.qmd , README.md , NEWS.md , LICENSE)

Contribution

You can contribute to the project by forking the repository on github and cloning the fork to your machine using several options, including GitHub desktop GUI. Further informations on contribution are detailed in the online document: https://bioforest-project.github.io/data_preparation/98_contributing.html.

Help

Please preferentially create an issue on GitHub for any questions, bugs or help needed regarding data_preparation: https://github.com/Bioforest-project/data_preparation/issues . You may however reach us by mail with people from the core group (see below).

Core group

• Sylvain Schmitt (sylvain.schmitt@cirad.fr)
• Camille Piponiot-Laroche (camille.piponiot-laroche@cirad.fr)
• Géraldine Derroire (geraldine.derroire@cirad.fr)
• Mithila Unkule (mithila.unkule@fondationbiodiversite.fr)
• Irié Cazimir Zo-Bi (iczobi@gmail.com)
• Anand Roopsind (aroopsind@gmail.com)

The whole group consist of participants to the Bioforest project.